Of the aortic arch. A modified 2D FLASH sequence with a

Of the Epigenetic Reader Domain aortic arch. A modified 2D FLASH sequence with a navigator echo (IntraGate, Bruker) was used for retrospective CINE MRI with the following parameters: Hermite-shaped RF pulse 1 ms; FA 15u; TR 31.4 ms; TE 2.96 ms; navigator echo points 64; 10 cardiac frames; FOV 1.8*1.8 cm2; matrix 128*96, zero-filled to 128*128; in-plane resolution 141 mm; 6 concomitant slices covering the inner curvature of the aortic arch; slice thickness 0.4 mm; number of repetitions 400; total acquisition time approximately 20 min.Images were positioned both perpendicular to and in line with the aortic arch according to an external placed reference to assure maintenance of the positioning plane pre and post contrast agent injection. We performed aortic diameter measurements with 5, 8, 12, 15, 23977191 20 and 40 frames to assess the variability in the diameter measurements in a group of 3 months old (hemodynamically stable) ApoE2/2 mice (n = 5) in relation to the frame number. All further analysis were performed using 10 reconstructed frames (Epigenetics Figure S2).Image AnalysisImages were analyzed using ImageJ software. For contrast to noise determination of micelles, black blood images in 3 to 4 adjacent cross-sectional slices (the ones that had the lowest signal intensity, i.e. black-blood) through the aortic arch were analyzed (Figure 1). For USPIO the bright blood images were analyzed. ROIs were semi-automatically drawn around the vessel wall (Iwall) in all 10 movie frames. A 2nd ROI was drawn in the surroundingMRI of Plaque Burden and Vessel Wall Stiffnessmuscle tissue of the shoulder girdle (Imuscle). Furthermore, an ROI was placed outside the animal to measure the noise level (SDnoise). The contrast o-noise ratio was defined in the 3 to 4 adjacent movie frames with the lowest signal intensity in the vessel lumen as follows: CNR wall{Imuscle?SDnoise ??CNR values are presented as mean 6 standard deviation. To calculate the vessel wall stiffness, the cross-sectional diameter and area of the aortic arch were segmented manually in each frame. MRI slices were positioned orthogonal to the aortic arch, the frames that were obtained just before and after the branch of the left carotid artery had a stable circular shape and were used for this analysis (Figure S3). For the determination of the circumferential strain as a measure of distensibility we assumed that 1) the deformation through the thickness of the vessel and 2) the deformation in the axial direction was small compared to the circumferential deformation, as previously described by Morrison et al. [28]. Assuming a circular cross section of the aorta, the following expression was used to calculate the circumferential cyclic strain, h i. A(t)= {1 Ehh A(t0) 2 where A is the cross sectional area of the aortic arch [15]. ??examinations, ranging from 490 to 520 beats/min and from 50 to 80 respirations/min respectively (data not shown). The navigator echo in this sequence was used to demerge a cardiac and respiratory signal and subsequently reconstruct the sample point according to the cardiac cycle (Figure 2A). However, even in cardiac and respiratory unstable mice it was feasible to obtain artifact-free MR images by specifically selecting the cardiac and respiratory weighting and periods used (Figure 2B). With retrospective-gated CINE MRI, the image reconstruction could be optimized after sampling all the data points; while maintaining the usual scan time, we could still generate correct and stable images of the aortic arch a.Of the aortic arch. A modified 2D FLASH sequence with a navigator echo (IntraGate, Bruker) was used for retrospective CINE MRI with the following parameters: Hermite-shaped RF pulse 1 ms; FA 15u; TR 31.4 ms; TE 2.96 ms; navigator echo points 64; 10 cardiac frames; FOV 1.8*1.8 cm2; matrix 128*96, zero-filled to 128*128; in-plane resolution 141 mm; 6 concomitant slices covering the inner curvature of the aortic arch; slice thickness 0.4 mm; number of repetitions 400; total acquisition time approximately 20 min.Images were positioned both perpendicular to and in line with the aortic arch according to an external placed reference to assure maintenance of the positioning plane pre and post contrast agent injection. We performed aortic diameter measurements with 5, 8, 12, 15, 23977191 20 and 40 frames to assess the variability in the diameter measurements in a group of 3 months old (hemodynamically stable) ApoE2/2 mice (n = 5) in relation to the frame number. All further analysis were performed using 10 reconstructed frames (Figure S2).Image AnalysisImages were analyzed using ImageJ software. For contrast to noise determination of micelles, black blood images in 3 to 4 adjacent cross-sectional slices (the ones that had the lowest signal intensity, i.e. black-blood) through the aortic arch were analyzed (Figure 1). For USPIO the bright blood images were analyzed. ROIs were semi-automatically drawn around the vessel wall (Iwall) in all 10 movie frames. A 2nd ROI was drawn in the surroundingMRI of Plaque Burden and Vessel Wall Stiffnessmuscle tissue of the shoulder girdle (Imuscle). Furthermore, an ROI was placed outside the animal to measure the noise level (SDnoise). The contrast o-noise ratio was defined in the 3 to 4 adjacent movie frames with the lowest signal intensity in the vessel lumen as follows: CNR wall{Imuscle?SDnoise ??CNR values are presented as mean 6 standard deviation. To calculate the vessel wall stiffness, the cross-sectional diameter and area of the aortic arch were segmented manually in each frame. MRI slices were positioned orthogonal to the aortic arch, the frames that were obtained just before and after the branch of the left carotid artery had a stable circular shape and were used for this analysis (Figure S3). For the determination of the circumferential strain as a measure of distensibility we assumed that 1) the deformation through the thickness of the vessel and 2) the deformation in the axial direction was small compared to the circumferential deformation, as previously described by Morrison et al. [28]. Assuming a circular cross section of the aorta, the following expression was used to calculate the circumferential cyclic strain, h i. A(t)= {1 Ehh A(t0) 2 where A is the cross sectional area of the aortic arch [15]. ??examinations, ranging from 490 to 520 beats/min and from 50 to 80 respirations/min respectively (data not shown). The navigator echo in this sequence was used to demerge a cardiac and respiratory signal and subsequently reconstruct the sample point according to the cardiac cycle (Figure 2A). However, even in cardiac and respiratory unstable mice it was feasible to obtain artifact-free MR images by specifically selecting the cardiac and respiratory weighting and periods used (Figure 2B). With retrospective-gated CINE MRI, the image reconstruction could be optimized after sampling all the data points; while maintaining the usual scan time, we could still generate correct and stable images of the aortic arch a.